nf-core/scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
- Stars
- 364
- Forks
- 234
- Language
- Nextflow
- License
- MIT
- Last commit
- updated Nov 2026
Straight from GitHub
Nobody has written up this repo. Everything on this page comes straight from the GitHub API, so there is no founder write-up, no pros and cons, and no difficulty rating — rather than a generated guess at them.
Maintenance
Pushed within three months of the last stats read (as of Nov 6, 2026).
Licence
MIT
Tech stack
Primary language: Nextflow. GitHub reports only the dominant language, so this is not the whole stack.
Install
No install command has been verified for this repo. Follow the README rather than a guess.
Quality score
Computed by the discovery import when this entry was added.
- Recent activity×0.30
- 1.00
How recently the default branch was pushed to.
- Adoption×0.20
- 0.55
Stars on a log scale, so adoption counts without dominating.
- Description and topics×0.15
- 1.00
Whether the repo describes itself: description, topics, homepage.
- README present×0.15
- 1.00
Whether the repository has a README at all.
- Licence clarity×0.10
- 1.00
Whether GitHub can resolve the licence to a recognised SPDX id.
- Issue health×0.10
- 0.40
Open issues relative to adoption, as a rough maintenance signal.
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